SIRD selection
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SIRD modeling
SIRD-LiSM
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SIRD modeling
SIRD : 080731
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3_1 : Superpose subunit
Superpose subunit1
File1
Chain
or
Code1
Chain
Start
End
To subunit2
File2
Chain
or
Code2
Chain
Start
End
Coverage >
% RMSD <
A
With ligand
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Reset
3_2 : Superpose ligand
Superpose ligand1
File1
or
Code1
LIGDIC
To ligand2
File2
or
Code2
LIGDIC
Mode
M(A,B)/M(A) >
M(A,B)/M(B) >
View model
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Reset
3_3 : Make quaternary complex
From Mol
PDB
Threshold
Chain Key
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Reset
3_4 : Search model graph
Search model templates for
File1
File2
File3
Mail alert
or
by uploading mailed result file
File (result)
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Reset
3_5 : Assemble complex
Complex1
Code1
or
File1
Chain1
pivot
Chain2
pivot
and
Complex2
Code2
or
File2
Chain1
pivot
Chain2
pivot
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(C)N-Bio/JST-BIRD