SIRD modeling
3_1 : Superpose subunit
Superpose subunit1
    
File1
Chain
or
Code1 ChainStartEnd

To subunit2
    
File2
Chain
or
Code2 ChainStartEnd

Coverage >  % RMSD <  A                         With ligand  View model
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3_2 : Superpose ligand
Superpose ligand1
  
File1
or
Code1   LIGDIC

To ligand2
  
File2
or
Code2   LIGDIC

Mode    M(A,B)/M(A) >    M(A,B)/M(B) >                    View model
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3_3 : Make quaternary complex
From Mol
     
PDB Threshold Chain Key

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3_4 : Search model graph
Search model templates for
File1
File2
File3

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by uploading mailed result file
File (result)
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3_5 : Assemble complex
Complex1
Code1
or
File1
Chain1  pivot  Chain2  pivot 
and
Complex2
Code2
or
File2
Chain1  pivot  Chain2  pivot 

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